jvx.numeric

Class PnEnergy

java.lang.Object

jv.object.PsObject

jvx.numeric.PnFunction

jvx.numeric.PnEnergy

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, PsUpdateIf

Direct Known Subclasses:

PnAlignmentEnergy, PnAreaEnergy, PnConfEnergy, PnDiriEnergy, PnGaussEnergy, PnSpringEnergy, PnVolumeEnergy

public abstract class PnEnergy
extends PnFunction

Energy functional on triangulated surfaces including gradient and hessian computations.

Surface must contain all boundary information. Domain is only used by some energy functionals to compute the stiffness matrix.

See Also:

Serialized Form

Field Summary

Fields inherited from class jv.object.PsObject

HAS_BOUNDARY_PANEL, HAS_CONFIG_PANEL, HAS_INFO_PANEL, HAS_LABEL_PANEL, HAS_MATERIAL_PANEL, HAS_TEXTURE_PANEL, HAS_VECTOR_PANEL, INSPECTOR_INFO, INSPECTOR_INFO_EXT, IS_DELETED, IS_FIXED, IS_FOCUSSED, IS_PICKED, IS_SELECTED, IS_USED, NUM_TAGS

Constructor Summary

Constructors

Constructor and Description
PnEnergy()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	computeNormalizedHessian(PdMatrix hessian, PdMatrix mass) Compute L2 normalized hessian.
double	eval(PdVector coord) Compute Area energy of a coord vector using the stiffness matrix of a PnArea instance.
PdVector	evalGradient(PdVector coord, PdVector gradient) Evaluate Area gradient of a coord vector using the stiffness matrix of a PnArea instance.
PdMatrix	evalHessian(PdMatrix hessian) Subclass must supply method to compute hessian of energy.
PdMatrix	getConstrain()
int	getNumOfVariables() Get number of free variables of energy.
PdVector[]	getSpectrum(PdVector eValue, PdVector[] eVector) Compute eigenvalues and eigenvectors of normalized hessian.
boolean	getZeroGradientAtBounds() Check if the gradient at the boundary is constrained to zero.
void	init() If instance has missing name then assign default name 'Object_NUMBER' where number is the total number of already created instances.
void	initSurface(PgElementSet domain, PgElementSet surface) Method called from energyMinimizer.minimizeStep() to update the stiffness matrix after conjugate gradient method has returned.
boolean	isEnabledConstrainMatrix() Determine if usage of a constrain matrix is enabled.
boolean	isUseConstrainMatrix()
void	setConstrain(PdMatrix constrain)
void	setEnabledConstrainMatrix(boolean flag) Enable usage of a constrain matrix for index computation of Neumann boundary geometries.
boolean	setSurface(PgElementSet domain, PgElementSet surface) Set domain and surface, and initialize energy structure.
void	setUseConstrainMatrix(boolean useConstrainMatrix)
void	setZeroGradientAtBounds(boolean flag) Constrains the gradient at the boundary to zero or not, if the boundary polygons of the geometry do not exist or have no boundary constraints.
void	testEigenvalues()

Methods inherited from class jvx.numeric.PnFunction

enableEvaluation, isEvaluable

Methods inherited from class jv.object.PsObject

addInspector, addUpdateListener, assureInspector, clearTag, clone, clone, clone, copy, getFather, getInfoPanel, getInspector, getName, getNumObjects, getSymbol, hasInspector, hasTag, hasUpdateListener, instanceOf, instanceOf, newInspector, newInspector, removeInspector, removeInspector, removeUpdateListener, setName, setParent, setSymbol, setTag, toString, update, updatePanels

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

PnEnergy

public PnEnergy()

Method Detail

init

public void init()

Description copied from class: PsObject

If instance has missing name then assign default name 'Object_NUMBER' where number is the total number of already created instances.

Overrides:

init in class PsObject

initSurface

public void initSurface(PgElementSet domain,
               PgElementSet surface)

Method called from energyMinimizer.minimizeStep() to update the stiffness matrix after conjugate gradient method has returned. E.g. PnDiriEnergy should copy surface into domain if in iteration mode i.e. if dimension of domain and surface are equal.

getNumOfVariables

public int getNumOfVariables()

Get number of free variables of energy.

Specified by:

getNumOfVariables in class PnFunction

isEnabledConstrainMatrix

public boolean isEnabledConstrainMatrix()

Determine if usage of a constrain matrix is enabled.

setEnabledConstrainMatrix

public void setEnabledConstrainMatrix(boolean flag)

Enable usage of a constrain matrix for index computation of Neumann boundary geometries.

setSurface

public boolean setSurface(PgElementSet domain,
                 PgElementSet surface)

Set domain and surface, and initialize energy structure. Method is called from outside whenever domain or surface has been updated.

Domain argument maybe null but surface must always be assigned.

Parameters:

domain - additional geometry used to specify maps

surface - geometry which is usually optimized

setZeroGradientAtBounds

public void setZeroGradientAtBounds(boolean flag)

Constrains the gradient at the boundary to zero or not, if the boundary polygons of the geometry do not exist or have no boundary constraints. Default is true, i.e. constrained gradient.

getZeroGradientAtBounds

public boolean getZeroGradientAtBounds()

Check if the gradient at the boundary is constrained to zero.

See Also:

setZeroGradientAtBounds(boolean)

eval

public double eval(PdVector coord)

Compute Area energy of a coord vector using the stiffness matrix of a PnArea instance. Method uses the array m_store of PnArea for intermediate storage and modifies its entries.

Specified by:

eval in class PnFunction

Parameters:

coord - Coordinate vector with list of doubles

Returns:

double Energy of coordinate vector

See Also:

PnAreaEnergy

evalGradient

public PdVector evalGradient(PdVector coord,
                    PdVector gradient)

Evaluate Area gradient of a coord vector using the stiffness matrix of a PnArea instance. Along boundary gradient is modified to fulfill any boundary constraints. Special feature for outside calls: If outside wants to evaluate the gradient without allocating gradient, then instead of gradient a null may be passed. In this case the gradient information is store in an internal variable which is returned as gradient. Handle with care and do not modify size returned gradient.

If no special boundary constraints are set, then you may use setZeroGradientAtBounds(boolean) to set the gradient zero at the boundary (or free again).

Specified by:

evalGradient in class PnFunction

Parameters:

coord - Coordinate vector with list of doubles

gradient - Gradient vector to be modified, maybe null.

See Also:

PnAreaEnergy

evalHessian

public PdMatrix evalHessian(PdMatrix hessian)

Subclass must supply method to compute hessian of energy.

Specified by:

evalHessian in class PnFunction

Parameters:

hessian - Hessian of energy with square size

getSpectrum

public PdVector[] getSpectrum(PdVector eValue,
                     PdVector[] eVector)

Compute eigenvalues and eigenvectors of normalized hessian.

Parameters:

eValue - Vector to store the eigenvalues. Size will be adjusted.

eVector - Possibly empty array to store the eigenvectors. Will be returned.

computeNormalizedHessian

public boolean computeNormalizedHessian(PdMatrix hessian,
                               PdMatrix mass)

Compute L2 normalized hessian.

Returns:

success

testEigenvalues

public void testEigenvalues()

getConstrain

public PdMatrix getConstrain()

Returns:

the constrain

setConstrain

public void setConstrain(PdMatrix constrain)

Parameters:

constrain -

isUseConstrainMatrix

public boolean isUseConstrainMatrix()

Returns:

the m_bUseConstrainMatrix

setUseConstrainMatrix

public void setUseConstrainMatrix(boolean useConstrainMatrix)

Parameters:

useConstrainMatrix -